Services for Academia


RemoteAnalyzer Sample Submission Portal

Upon submission of samples to the EPSRC UK NMSF you are agreeing to Acknowledge the work performed by the EPSRC UK NMSF in any resulting publication using the following text:

"the EPSRC UK National Mass Spectrometry Facility at Swansea University"


The sample submission portal allows our customers to submit samples, monitor the progress of their samples and allow the NMSF to store the sample results, for raw data and processed data (currently PDF).

Raw data files, or folder structures, maybe compressed to a .7z file to save storage space and increase download speeds. In order to open .7z files or to learn more please visit: For Windows 7-zip.org, for Mac OS X http://www.kekaosx.com/en/ and for Linux http://p7zip.sourceforge.net/.

RemoteAnalyzer, is developed by SpectralWorks Ltd.


The following documents relate to submitting samples via the RemoteAnalyzer portal:

Instrument Status

Instrument

Orbitrap (nano-ESI) Online

Xevo (ASAP (APCI)) Online

UltrafleXtreme (MALDI) Online

Voyager (Solvent free MALDI) Online

MAT 95 (EI/CI) Online

GCT (GC-MS (EI/CI)) Online

DSQ-II (GC-MS (EI/CI)) Online

Maintenance is not scheduled for this week.

DATA OUTPUT - understanding your results

CHARACTERISATION SCANS
EI and CI: MAT95
LSIMS ("FAB"): MAT95
ESI and nanoESI: Orbitrap
APCI ("ASAP"): Orbitrap
MALDI: Voyager

ACCURATE MASS MEASUREMENT:
ESI, EI, CI, LSIMS single ion measurements using MAT95
ESI full-scan accurate mass using Orbitrap, and generated list of possible elemental formulae

SEPARATION TECHNIQUES:
GC-MS: data should be self-explanatory
LC-MS: Orbitrap

Academic Publishers

Company Website Resource
Wiley www.wileyonlinelibrary.com/onlineopen Journal articles, books
www.wiley.com/legacy/wileychi/ms/ Comprehensive web resource for Mass Spectrometrists
RSC www.rsc.org/Publishing/Journals/OpenScience/ Journal articles, books
www.chemspider.com/ Chemical database
www.rsc.org/learn-chemistry/resource Comprehensive chemistry resources
Elsevier www.elsevier.com Journal articles, books, tools for searching, bibliographic databases and interactive applications

Mass Spectrometry and Analytical equipment and Suppliers

Company Website Resource
ChromAcademy www.chromacademy.com/ HPLC, GC, MS and sample preparation Classes, Webcasts & Tutorials, Application Notes, Tools and Links
NIST www.nist.gov WebBooks, Spectra Databases, MALDI sample preparation
Web of Knowledge http://ipscience.thomsonreuters.com/product/web-of-science/ Literature search engine
Bruker www.bruker.com/products/mass-spectrometry-and-separations/literature/literature-room.html Large database of MS-related documents
PubMed www.ncbi.nlm.nih.gov/pubmed/ Various databases
BLAST server at Sanger www.sanger.ac.uk/resources/software/blast/ Various genome BLAST and BLAT services
IHOP (information hyperlinked over proteins) www.ihop-net.org/UniPub/iHOP/ Literature search aid
Uniprot database www.uniprot.org/ Tools for peptide and protein sequencing
ProteinProspector at UCSF prospector.ucsf.edu/prospector/mshome.htm Tools for peptide and protein sequencing
MS-BLAST server at Harvard genetics.bwh.harvard.edu/msblast/ Tools for peptide and protein sequencing
DeltaMass abrf.org/delta-mass Database of protein post

translational modifications

Phosphosite prediction www.cbs.dtu.dk/services/NetPhos/ Neural network predictions for serine, threonine and tyrosine phosphorylation sites in eukaryotic proteins
Glycosite prediction www.cbs.dtu.dk/services/NetOGlyc/ Neural network predictions of mucin type GalNAc O-glycosylation sites in mammalian proteins
Proteinmetrics Preview software proteinmetrics.com/software-products/preview/ PreviewT samples MS/MS data to measure mass errors, digestion specificity, and modifications for subsequent full search
Skyline software for protein quantitation brendanx-uw1.gs.washington.edu/labkey/project/home/software/Skyline/begin.view Windows client application for building Selected Reaction Monitoring (SRM) / Multiple Reaction Monitoring (MRM) and Full-Scan (MS1 and MS/MS) quantitative methods and analysing the resulting mass spectrometer data
Essentials of Glycobiology www.ncbi.nlm.nih.gov/books/NBK20709/ E-book
Neuroproteomics www.ncbi.nlm.nih.gov/books/NBK56018/ E-book
Biotage http://www.biotage.com/?id=100880&mn1=1762 Applications Notes, Published Articles, Chemistry Data Sheets, Presentations, Poster Sessions, and Technology relating to Biotage
Thermo portal.thermo-brims.com/ Proteomics Portal software (Discover, Identify:Top Down, Identify:Bottom Up, Interpret, Target)
https://www.thermofisher.com/uk/en/home/industrial/mass-spectrometry.html Instrument and Software information
planetorbitrap.com/ Technology, Library, Applications, Products, Community, and News & Events relating to the Orbitrap
Waters www.waters.com/waters/home.htm Database of MS application notes, including 'How to' videos
Shimadzu prominenceva.ssi.shimadzu.com/

LC Virtual Advisor web application
Matrix Science www.matrixscience.com/search_form_select.html Mascot Server
www.matrixscience.com/msparser.html Mascot Parser
www.matrixscience.com/distiller.html Mascot Distiller
www.matrixscience.com/wizard_support.html Mascot Wizard
www.matrixscience.com/help/instruments_4000.html#TS2 TS2Mascot
www.matrixscience.com/training.html Mascot Training course
MestreLab Resources Plug-ins, Manuals, Webinars
Agilent http://www.agilent.com/en-us/services/analytical-instrument-services

Products & Services, Technical Support, Solutions, Library, Training & Events